hierfstat, a pack-age for the statistical software r (R Development Core Team ) that implements Yang’s algorithm and com-putes moment estimators of hierarchical F-statistics from any number of hierarchical levels. In addition, this package allows testing the significance of the different levels of differentiation using randomization tests. I loaded in R. All well. The problem comes after I convert the data frame in a genind object. (I have 10 geographical origins on my data. The data frame is called adeg1): h. HIERFSTAT is a package for R allowing to estimate F-statistics and variance components with the methods of moments for any number of levels in a hierarchy. The package also allows to test the significance of population differentiation using the likelihood ratio G-statistic or the variance components.
CRAN - Package hierfstat. Estimates hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels in the hierarchy, following the algorithm of Yang (Evolution (), ). Package ‘hierfstat’ Febru Version Date Title Estimation and tests of hierarchical F-statistics Author Jerome Goudet Maintainer Jerome Goudet Depends gtools Suggests adegenet,ape Description This R package allows the estimation of hierarchical. HIERFSTAT is a package for R allowing to estimate F-statistics and variance components with the methods of moments for any number of levels in a hierarchy. The package also allows to test the significance of population differentiation using the likelihood ratio G-statistic or the variance components.
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